I am in the process of rebuilding the transom on my 14 ft Fabuglass closedbow runabout.

We live on a lake that is limited to 15hp motors so these old runabouts are a fun alternative to a slow pontoon (I have a 24 pontoon with a 9.9 hp motor). I got the boat with new carpet, new seats, steering converted to teleflex, and mercury controls for $400 a couple years ago. I put on a new Merc 15hp and we got a fun little boat. I thought the transom was pretty solid but over time and some stand water has caused it to rot so I am replacing it this winter.
Here is a picture of the transom area with motor off before demo

and another

Here is a picture after some initial demo

and another

Have done more demo - basically have all the plywood off transom which was not fun but almost done. I will post pictures of where I am now later tonight. The transom is 1 1/4 thick and it looked like it had only one maybe two layers of glass on the inside. The floor of the well area was 1/4 thick ply covered in glass.
At this point I am mulling two different rebuilds. 1) The first is to rebuild it as it was with the 1 1/4 transom and put the 1/4 decking in the well area but include more access hatches. When I first got the boat there was no inspection port which lead to the standing water when the boat was in the water. 2) The second thought is to not put the decking back on and leave the bottom of the boat exposed (ie you can see stringers, bottom of boat etc). Either way and I am going to put a bilge pump in.
So my question is if I go with 2) above and leave the decking off do I need to increase the transom to 1 1/2 or so for straighten? The deck was glassed into the transom and I am assuming it gave it added strength like the rear seat of my GF 12. I am assuming if I go with no decking I can lower the level of the stringers (which are actually in decent shape except for the last 5 inches or so.)
Next question is with the old transom almost out the fiberglass skin is pretty flimsy. What is the best way to make sure the new transom is bonded to the old skin? I am not sure I have clamps deep enough for the bottom half of the transom.
Thanks for you help.
Scott R